Payroll software for nonprofit organizations

All programs, one payroll run.

Manage split-funded positions and stipends in one place, then run audit-ready payroll.

Best Small Business Payroll 2025

Best Payroll for Hourly Teams 2024

Best Payroll for Small Business 2024

Best Employee Scheduling Software of 2023

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Best Employee Scheduling Software of 2023

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Best Employee Scheduling Software of 2023

Best payroll for hourly teams

Best payrollfor automation

Best payroll for small business

Best Employee Scheduling Software of 2023

Investopedia | logo

Best Employee Scheduling Software of 2023

The Motley Fool | logo

Best Employee Scheduling Software of 2023

Made for hourly teams

Payroll that respects your mission and your budget.

Track program staff and volunteers, handle grant-funded positions, run payroll—all in one affordable system built for nonprofits.

Track hours by program and grant in one place

Assign staff time to specific programs, generate funder reports, prove grant compliance—automatically built in.

Track volunteer hours and pay program coordinators—once

Volunteers clock in for reporting, paid staff clock in for payroll—both tracked seamlessly through the same interface.

Stay audit-ready with automatic record storage

Timecard records, tax filings, payment histories—stored and organized automatically for when auditors or funders ask.

run your team and Payroll in one App

Sign up in 5 minutes.

All-in-one payroll for non-profit organizations

Track staff hours by program and run payroll from one system.

Homebase connects scheduling, time tracking, and payroll so your nonprofit accurately tracks labor costs by funding source without switching apps or maintaining separate spreadsheets.

  • Schedule program staff across multiple locations or grants with geolocation tracking for field workers—hours flow to payroll with notes indicating which funding source or project they worked on.
  • Pay full-time employees and part-time program assistants in one payroll run while tracking time across different grants—with automatic W-2 generation at year-end.
  • Homebase automatically calculates, deposits, and files your federal, state, and local payroll taxes—the most complex part of payroll—so you pass audits without scrambling for documentation or worrying about penalties.

Run restaurant payroll in four simple steps.

Build schedules, track time, and pay your team—all connected so nothing falls through the cracks.

1. Hire

Post jobs, track applicants, and onboard new hires.

2. Schedule

Add your team. Build instant, automated schedules.

3. Track

Shifts sync to time clocks to keep your team on track.

4. Pay

View hours and wages. Run payroll quickly and accurately.

A real impact on real people.

behind every number is a happier team.

FROM TIP POOLS TO PAYCHECKS, DONE

FAQ

Questions?
We’ve got time.

Connect with a payroll expert to see how it all works.

Book a Call

How does Homebase payroll handle tip pooling and tipped minimum wage for restaurant staff?

Can Homebase handle servers working at tipped wage one day and regular hourly the next?

Does Homebase restaurant payroll integrate with QuickBooks for accounting?

How does Homebase handle payroll tax filing for restaurants?

Does Homebase support multi-location restaurant payroll and multi-state compliance?

Can Homebase track overtime and break compliance for restaurant hourly employees?

What other products can power your restaurant’s success?

We play well with others.

Sync your POS with Homebase to optimize your schedule based on your sales.